Jean and Scott get married. Newly elected President Kelly has freed Beast who has been incarcerated since the attack on government facility at the beginning of Season 1 and added him as part of his Presidential cabinet. Another friend who was thought to be dead at the same incident has resurfaced, but this time he's not so friendly. With the President's newly found pr...

Scott and Jean are on their way to a secluded island for their honeymoon, but gets cut short by Mister Sinister. As Morph continues with his plans of revenge against the X-Men, he starts losing his motivation. But Mister Sinister makes sure he finishes what he started. The Friends of Humanity have began to rally.

Storm recovers from her injuries and returns to her duty as leader of the X-Men. When a tear in the astral plane appears in Africa, Storm goes there to investigate. It just so happens that the tear is in her home village. Meanwhile Xavier and Magneto are lured to the Savage Land in Antarctica and Wolverine continues his search for Morph.

Colossus returns home to Russia with Jubilee by his side. They are confronted by a newly revived Russian, life force absorbing, super soldier from the cold war, named Omega Red, who has a bad history with Wolverine. Xavier and Magneto continue their treacherous journey through the Savage Land.

After Wolverine has been lured to Canada by an alleged message from his old friend, Heather Hudson, he finds himself fighting Heather's husband, Vindicator, and the Canadian super team, Alpha Flight, instead. Alpha Flight believes that they were only sent after Wolverine to get him to rejoin their team. However, their General Chasen has a more sinister agenda: to retr...

Every ten years, The Assassins Guild and The Thieves Guild must each give an offering to a supernatural being called The X-Ternal, in exchange for power. When it comes to be Gambit's brother, Bobby, who has to offer the tithing this time, he comes up missing. The Assassins Guild want to exchange him for Gambit, so he can finally come face to face with the woman he lef...

Bishop returns from the future to again attempt to fix his world, but this time his actions lead up to a far greater tragedy occurring.

To stabilize his own timeline, Cable comes to the present to prevent Bishop from saving mutant-kind from Apocalypse's plague.

Mr. Sinister send Mystique to destroy the X-Men while Professor X is lost in the Savage Land. Rogue starts having painful visions of a mysterious woman and they're literally driving her crazy when the mysterious woman possesses Rogue's body. Unknown to the X-men, this mystery woman holds some dark secrets to Rogue's past before she joined the X-Men.

The Friends Of Humanity attack a hospital for the blind that Beast is working at. And Wolverine plans on tearing them apart from the inside. Beast and one of his blind patients, Carly, fall in love together. But Carly's father is a mutant hater and won't stand to see them associating with each other. When the Friends Of Humanity kidnap Carly for associating with a mut...

On a world ruled by Television, an alien named Mojo is master. When he abducts the X-Men and forces them to be action heroes in his shows, he may have to deal with more than he bargained for when Mojo's original action hero sabotages him. Xavier and Magneto are still slowly making their way through the Savage Land.

Xavier and Magneto finally make their way back to Xavier's plane, only to be ambushed by some mutates. The new ruler of the Savage Land is revealed but not until they make a new ally. Morph sends a message to the X-Men revealing his location which provides an encounter with Mr. Sinister and his group of Nasty Boys.

The X-Men are now in the Savage Land and are powerless like Xavier and Magneto, which leaves the X-Men open to being experimented on by Mr. Sinister. The only ones left to rescue them are Ka-Zar and Wolverine. Once everyone regains their powers, the Savage Land is restored. But what does the future hold for the Savage Land now?